miRBase entry: cin-mir-4009b

Stem-loop cin-mir-4009b


Accession
MI0015549
Description
Ciona intestinalis cin-mir-4009b precursor miRNA


Sequence

335 reads, 120 reads per million, 2 experiments
GGUAUGUUUAGUGUUCAAGAgcaagcauagcUAUUGCACACUAAUGUACCCU
((((((((.(((((.(((.(((.......))).))).)))))))))))))..

Structure
--        U     U   G   aa 
  GGUAUGUU AGUGU CAA Agc  g
  |||||||| ||||| ||| |||  c
  CCAUGUAA UCACA GUU Ucg  a
UC        -     C   A   au 


Annotation confidence High
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Genome context
1q: 160807-160858 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cin-mir-4009b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4009b-5p

Accession MIMAT0016503
Description Ciona intestinalis cin-miR-4009b-5p mature miRNA
Sequence 1 - GGUAUGUUUAGUGUUCAAGA - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4009b-3p

Accession MIMAT0016504
Description Ciona intestinalis cin-miR-4009b-3p mature miRNA
Sequence 32 - UAUUGCACACUAAUGUACCCU - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39