Stem-loop cin-mir-4010

Accession

MI0015551

Description

Ciona intestinalis cin-mir-4010 precursor miRNA

Sequence

1461 reads, 478 reads per million, 2 experiments

AACGUAUGUCGAGCAAACAUugcaugagucaucaugacauggCAAGUUUGUCGCCAUACUUC
...(((((.(((.(((((.((((....((((...))))...)))))))))))).)))))...

Structure

AAC     U   G     A    auga    u 
   GUAUG CGA CAAAC Uugc    guca  
   ||||| ||| ||||| ||||    |||| c
   CAUAC GCU GUUUG AACg    cagu  
CUU     C   -     -    -gua    a 

Annotation confidence Not enough data

Genome context

3q: 2402160-2402221 [-]

Mature cin-miR-4010-3p

• Accession: MIMAT0016507
• Description: Ciona intestinalis cin-miR-4010-3p mature miRNA
• Sequence: 43 - CAAGUUUGUCGCCAUACUUC - 62
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4010-5p

• Accession: MIMAT0016506
• Description: Ciona intestinalis cin-miR-4010-5p mature miRNA
• Sequence: 1 - AACGUAUGUCGAGCAAACAU - 20

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39