Stem-loop sequence cin-mir-4012-1

Accession MI0015555
Description Ciona intestinalis miR-4012-1 stem-loop
Gene family MIPF0000964; mir-4012
Stem-loop 
a         --u    u         g    u 
 agcuuaugu   caug augcugugu uaua a
 |||||||||   |||| ||||||||| ||||  
 ucgagugua   guau uacgacaug gugu u
a         uau    -         -    g
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Genome context
Coordinates (JGI2) Overlapping transcripts
scaffold_67: 367730-367793 [-]
sense
ENSCINT00000027530 ; F7A5V0_CIOIN; intron 6
ENSCINT00000007905 ; F6Z8S6_CIOIN; intron 7
Clustered miRNAs
< 10kb from cin-mir-4012-1
cin-mir-4178b scaffold_67: 367799-367860 [-]
cin-mir-4012-1 scaffold_67: 367730-367793 [-]
cin-mir-4178a scaffold_67: 366326-366385 [-]
cin-mir-4012-2 scaffold_67: 366261-366319 [-]
Database links

Mature sequence cin-miR-4012-5p

Accession MIMAT0016512
Sequence

1 -  

aagcuuauguucauguaugc

 - 20

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Evidence experimental; Solexa [1]

References

1
PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).