miRBase entry: cin-mir-4012-1

Stem-loop cin-mir-4012-1


Accession
MI0015555
Description
Ciona intestinalis cin-mir-4012-1 precursor miRNA
Gene family
MIPF0000964; mir-4012


Sequence

5 reads, 3 reads per million, 2 experiments
AAGCUUAUGUUCAUGUAUGCuguguguauauaugugugguacagcauuauguauaugugagcua
.(((((((((.((((.((((((((..((((....)))).))))))))))))...))))))))).

Structure
A         --U    U        ug    u 
 AGCUUAUGU   CAUG AUGCugug  uaua a
 |||||||||   |||| ||||||||  ||||  
 ucgagugua   guau uacgacau  gugu u
a         uau    -        -g    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_67: 367730-367793 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cin-mir-4012-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4012-5p

Accession MIMAT0016512
Description Ciona intestinalis cin-miR-4012-5p mature miRNA
Sequence 1 - AAGCUUAUGUUCAUGUAUGC - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39