miRBase entry: cin-mir-4015-1

Stem-loop cin-mir-4015-1


Accession
MI0015561
Description
Ciona intestinalis cin-mir-4015-1 precursor miRNA
Gene family
MIPF0000958; mir-4015


Sequence

365 reads, 158 reads per million, 2 experiments
ACAAUGAAAUUAACCUUCUCugugacgucaGGAUAGGUUGAAUUCAUCGU
((.(((((.(((((((..((((......))))..))))))).))))).))

Structure
  A     A       UC    ug 
AC AUGAA UUAACCU  UCug  a
|| ||||| |||||||  ||||   
UG UACUU AGUUGGA  GGac  c
  C     A       UA    ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_806: 19622-19671 [-]

Database links

Mature cin-miR-4015-5p

Accession MIMAT0016520
Description Ciona intestinalis cin-miR-4015-5p mature miRNA
Sequence 1 - ACAAUGAAAUUAACCUUCUC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4015-3p

Accession MIMAT0016521
Description Ciona intestinalis cin-miR-4015-3p mature miRNA
Sequence 31 - GGAUAGGUUGAAUUCAUCGU - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39