miRBase entry: cin-mir-4018b

Stem-loop cin-mir-4018b


Accession
MI0015569
Description
Ciona intestinalis cin-mir-4018b precursor miRNA


Sequence

18178 reads, 6668 reads per million, 2 experiments
AGGAACAUUCUGUGGAACGGgcugguuuaaaccggucugauccgguauucggguuccAGCUGUUUCACGGCGUUCCA
.(((((...(((((((((((.((((.....(((((......))))).........))))))))))))))).))))).

Structure
A     AUU           g    ----uuuaa     uc 
 GGAAC   CUGUGGAACGG cugg         accgg  u
 |||||   ||||||||||| ||||         |||||   
 CCUUG   GGCACUUUGUC GAcc         uggcc  g
A     --C           -    uugggcuua     ua 


Annotation confidence Not enough data
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Genome context
3p: 1539164-1539240 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4018b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4018b-5p

Accession MIMAT0016530
Description Ciona intestinalis cin-miR-4018b-5p mature miRNA
Sequence 1 - AGGAACAUUCUGUGGAACGG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4018b-3p

Accession MIMAT0016531
Description Ciona intestinalis cin-miR-4018b-3p mature miRNA
Sequence 58 - AGCUGUUUCACGGCGUUCCA - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39