miRBase entry: cin-mir-4020a

Stem-loop cin-mir-4020a


Accession
MI0015570
Description
Ciona intestinalis cin-mir-4020a precursor miRNA


Sequence

UGUGGUUAAGUUGGUGCAaaugauuguuacaauacuuguuauuauuuaggacaaaccuuagccuuu
...(((((((((.((.((((((((....((((...)))).))))))).).)).)).)))))))...

Structure
UGU       -  G  G -       uguu    u 
   GGUUAAG UU GU C Aaaugau    acaa  
   ||||||| || || | |||||||    |||| a
   ccgauuc aa ca g uuuauua    uguu  
uuu       c  a  g a       ---u    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-miR-4020a-5p

Accession MIMAT0016532
Description Ciona intestinalis cin-miR-4020a-5p mature miRNA
Sequence 1 - UGUGGUUAAGUUGGUGCA - 18
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39