miRBase entry: cin-mir-4020b

Stem-loop cin-mir-4020b


Accession
MI0015571
Description
Ciona intestinalis cin-mir-4020b precursor miRNA


Sequence

75 reads, 31 reads per million, 2 experiments
GUGUGGUUGGUUGGUGGUUGauggcguucuauaaguuacaauucACCCAUUCAUUCCCCGCACA
((((((.(((.(((((((((.((((.........))))))).))).))).)))....)))))).

Structure
-      ---U   U   -   -   a    guu 
 GUGUGG    UGG UGG UGG UUG uggc   c
 ||||||    ||| ||| ||| ||| ||||   u
 CACGCC    ACU ACC Acu aac auug   a
A      CCUU   U   C   u   -    aau 


Annotation confidence Not enough data
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Genome context
scaffold_197: 39348-39411 [-]

Database links

Mature cin-miR-4020b-5p

Accession MIMAT0016533
Description Ciona intestinalis cin-miR-4020b-5p mature miRNA
Sequence 1 - GUGUGGUUGGUUGGUGGUUG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4020b-3p

Accession MIMAT0016534
Description Ciona intestinalis cin-miR-4020b-3p mature miRNA
Sequence 45 - ACCCAUUCAUUCCCCGCACA - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39