miRBase entry: cin-mir-4024

Stem-loop cin-mir-4024


Accession
MI0015575
Description
Ciona intestinalis cin-mir-4024 precursor miRNA


Sequence

4 reads, 2 reads per million, 1 experiments
UUUGUAGGAUGAAAAGGUGaauacauagcaacaugcaccaauauuaaauuuauauUUUCAUCUUUUGAUCCUAUG
...(((((((.((((((((((......(((...)))...(((((.......))))))))))))))).))))))).

Structure
UUU       G          uacauagcaacaugcacc     ua 
   GUAGGAU AAAAGGUGaa                  aauau  a
   ||||||| ||||||||||                  |||||  a
   UAUCCUA UUUUCUACUU                  Uuaua  u
--G       G          ------------------     uu 


Annotation confidence Not enough data
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Genome context
4q: 3219604-3219678 [-]

Database links

Mature cin-miR-4024-5p

Accession MIMAT0016539
Description Ciona intestinalis cin-miR-4024-5p mature miRNA
Sequence 1 - UUUGUAGGAUGAAAAGGUG - 19
Evidence experimental
Illumina [1]

Mature cin-miR-4024-3p

Accession MIMAT0016540
Description Ciona intestinalis cin-miR-4024-3p mature miRNA
Sequence 56 - UUUCAUCUUUUGAUCCUAUG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39