miRBase entry: cin-mir-4030

Stem-loop cin-mir-4030


Accession
MI0015581
Description
Ciona intestinalis cin-mir-4030 precursor miRNA


Sequence

34361 reads, 12215 reads per million, 2 experiments
AAAGUGCAACUUUGAUAGUGuguaacucuccaCGCUAUCAGAUGUGCUCUUA
.(((.(((..((((((((((((........))))))))))))..))).))).

Structure
A   U   AC            uaa 
 AAG GCA  UUUGAUAGUGug   c
 ||| |||  ||||||||||||    
 UUC CGU  AGACUAUCGCac   u
A   U   GU            cuc 


Annotation confidence Not enough data
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Genome context
3q: 5430401-5430452 [-]

Database links

Mature cin-miR-4030-5p

Accession MIMAT0016549
Description Ciona intestinalis cin-miR-4030-5p mature miRNA
Sequence 1 - AAAGUGCAACUUUGAUAGUG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4030-3p

Accession MIMAT0016550
Description Ciona intestinalis cin-miR-4030-3p mature miRNA
Sequence 33 - CGCUAUCAGAUGUGCUCUUA - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39