Stem-loop sequence cin-mir-4037

Accession MI0015588
Description Ciona intestinalis miR-4037 stem-loop
Stem-loop 
aca     ac    c   a     -c  a 
   auugc  ucgu ugu ccgcc  cc u
   |||||  |||| ||| |||||  ||  
   uaacg  agca aca ggcgg  gg g
ucg     gu    -   -     ua  c
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Genome context
Coordinates (JGI2) Overlapping transcripts
scaffold_65: 663455-663511 [+]
intergenic
Clustered miRNAs
< 10kb from cin-mir-4037
cin-mir-4039 scaffold_65: 663235-663284 [+]
cin-mir-4061 scaffold_65: 663351-663400 [+]
cin-mir-4037 scaffold_65: 663455-663511 [+]
cin-mir-4052 scaffold_65: 663557-663606 [+]
Database links

Mature sequence cin-miR-4037-5p

Accession MIMAT0016563
Sequence

1 -  

acaauugcacucgucuguaccg

 - 22

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Evidence experimental; Solexa [1]

Mature sequence cin-miR-4037-3p

Accession MIMAT0016564
Sequence

38 -  

cggacaacgauggcaaugcu

 - 57

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Evidence experimental; Solexa [1]

References

1
PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).