Stem-loop sequence cin-mir-4039

Accession MI0015590
Description Ciona intestinalis miR-4039 stem-loop
Stem-loop 
u   ug    ug          ua 
 aua  aaga  uaagcuauuc  u
 |||  ||||  ||||||||||   
 uau  uucu  guuugauaag  a
u   gu    uu          uu
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Genome context
Coordinates (JGI2) Overlapping transcripts
scaffold_65: 663235-663284 [+]
intergenic
Clustered miRNAs
< 10kb from cin-mir-4039
cin-mir-4039 scaffold_65: 663235-663284 [+]
cin-mir-4061 scaffold_65: 663351-663400 [+]
cin-mir-4037 scaffold_65: 663455-663511 [+]
cin-mir-4052 scaffold_65: 663557-663606 [+]
Database links

Mature sequence cin-miR-4039-5p

Accession MIMAT0016567
Sequence

1 -  

uauaugaagauguaagcuau

 - 20

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Evidence experimental; Solexa [1]

Mature sequence cin-miR-4039-3p

Accession MIMAT0016568
Sequence

31 -  

auaguuuguuucuuuguauu

 - 50

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).