miRBase entry: cin-mir-4041

Stem-loop cin-mir-4041


Accession
MI0015592
Description
Ciona intestinalis cin-mir-4041 precursor miRNA
Gene family
MIPF0001266; mir-4041


Sequence

293 reads, 119 reads per million, 2 experiments
CAGUGAUUCAAGUCCUAUCUgcugcuucaucggCAAUAGGUCUUUAAUCAUUG
((((((((.(((.(((((.(((((......)))))))))).))).))))))))

Structure
        C   U     C     cu 
CAGUGAUU AAG CCUAU Ugcug  u
|||||||| ||| ||||| |||||   
GUUACUAA UUC GGAUA ACggc  c
        U   U     -     ua 


Annotation confidence High
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Genome context
3p: 2002875-2002927 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cin-mir-4041
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4041-5p

Accession MIMAT0016571
Description Ciona intestinalis cin-miR-4041-5p mature miRNA
Sequence 1 - CAGUGAUUCAAGUCCUAUCU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4041-3p

Accession MIMAT0016572
Description Ciona intestinalis cin-miR-4041-3p mature miRNA
Sequence 34 - CAAUAGGUCUUUAAUCAUUG - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39