miRBase entry: cin-mir-4048

Stem-loop cin-mir-4048


Accession
MI0015599
Description
Ciona intestinalis cin-mir-4048 precursor miRNA


Sequence

2710 reads, 955 reads per million, 2 experiments
GCACCUUGGUCACCAUUAUUUGcuccuuuuauauugaGCAGUACUGGAGACAGGUGG
.(((((..(((.(((.((((.((((..........)))))))).))).)))))))).

Structure
G     UG   A   U    U    cuuu 
 CACCU  GUC CCA UAUU Gcuc    u
 |||||  ||| ||| |||| ||||     
 GUGGA  CAG GGU AUGA CGag    a
G     --   A   C    -    uuau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
13q: 1419229-1419285 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4048
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4048-5p

Accession MIMAT0016585
Description Ciona intestinalis cin-miR-4048-5p mature miRNA
Sequence 1 - GCACCUUGGUCACCAUUAUUUG - 22
Evidence experimental
Illumina [1]

Mature cin-miR-4048-3p

Accession MIMAT0016586
Description Ciona intestinalis cin-miR-4048-3p mature miRNA
Sequence 38 - GCAGUACUGGAGACAGGUGG - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39