Stem-loop cin-mir-4050

Accession

MI0015601

Description

Ciona intestinalis cin-mir-4050 precursor miRNA

Sequence

1779 reads, 616 reads per million, 2 experiments

UAGGUAAAUCAAAUUUCAGGCUGuuagugagaccaaCAGCUUGAAUUUGUUGCCUA
(((((((..((((((.(((((((((.((...)).))))))))))))))))))))))

Structure

       AU      U         a  g 
UAGGUAA  CAAAUU CAGGCUGuu gu  
|||||||  |||||| ||||||||| || a
AUCCGUU  GUUUAA GUUCGACaa ca  
       --      -         c  g 

Annotation confidence High

Genome context

5q: 3937936-3937991 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cin-mir-4050

Mature cin-miR-4050-5p

• Accession: MIMAT0016589
• Description: Ciona intestinalis cin-miR-4050-5p mature miRNA
• Sequence: 1 - UAGGUAAAUCAAAUUUCAGGCUG - 23
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4050-3p

• Accession: MIMAT0016590
• Description: Ciona intestinalis cin-miR-4050-3p mature miRNA
• Sequence: 37 - CAGCUUGAAUUUGUUGCCUA - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39