Stem-loop cin-mir-4051

Accession

MI0015602

Description

Ciona intestinalis cin-mir-4051 precursor miRNA

Sequence

1702 reads, 581 reads per million, 2 experiments

UUCAACCAUCACGGCACUAUuggguuaaacacCCAAGGUCGAGGUGAUUGAA
.((((.((((.((((.((..(((((.....))))))))))).)))).)))).

Structure

U    C    A    A  AU     u 
 UCAA CAUC CGGC CU  ugggu a
 |||| |||| |||| ||  ||||| a
 AGUU GUGG GCUG GA  ACCca a
A    A    A    -  --     c 

Annotation confidence High

Genome context

scaffold_215: 27698-27749 [-]

Mature cin-miR-4051-5p

• Accession: MIMAT0016591
• Description: Ciona intestinalis cin-miR-4051-5p mature miRNA
• Sequence: 1 - UUCAACCAUCACGGCACUAU - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4051-3p

• Accession: MIMAT0016592
• Description: Ciona intestinalis cin-miR-4051-3p mature miRNA
• Sequence: 33 - CCAAGGUCGAGGUGAUUGAA - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39