miRBase entry: cin-mir-4055

Stem-loop cin-mir-4055


Accession
MI0015606
Description
Ciona intestinalis cin-mir-4055 precursor miRNA


Sequence

1117 reads, 453 reads per million, 2 experiments
UAUUCGGAAAUGUAGGGUGGacguuaucauaauucgACCAUUCUGUGUUUCGAAUG
((((((.(((((((((((((.((...........)).)))))))))))))))))))

Structure
      G             a  uuau 
UAUUCG AAAUGUAGGGUGG cg    c
|||||| ||||||||||||| ||    a
GUAAGC UUUGUGUCUUACC gc    u
      -             A  uuaa 


Annotation confidence Not enough data
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Genome context
7q: 1173809-1173864 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cin-mir-4055
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4055-5p

Accession MIMAT0016599
Description Ciona intestinalis cin-miR-4055-5p mature miRNA
Sequence 1 - UAUUCGGAAAUGUAGGGUGG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4055-3p

Accession MIMAT0016600
Description Ciona intestinalis cin-miR-4055-3p mature miRNA
Sequence 37 - ACCAUUCUGUGUUUCGAAUG - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39