miRBase entry: cin-mir-4059

Stem-loop cin-mir-4059


Accession
MI0015610
Description
Ciona intestinalis cin-mir-4059 precursor miRNA


Sequence

1506 reads, 546 reads per million, 2 experiments
UAGCAGCAAAGACAGUAUUGgaauguuugcuuCAAUGCUGCACUUGCUGCUC
.((((((((...((((((((((........))))))))))...)))))))).

Structure
U        AGA          aug 
 AGCAGCAA   CAGUAUUGga   u
 ||||||||   ||||||||||    
 UCGUCGUU   GUCGUAACuu   u
C        CAC          cgu 


Annotation confidence Not enough data
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Genome context
7q: 4571246-4571297 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4059
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4059-5p

Accession MIMAT0016606
Description Ciona intestinalis cin-miR-4059-5p mature miRNA
Sequence 1 - UAGCAGCAAAGACAGUAUUG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4059-3p

Accession MIMAT0016607
Description Ciona intestinalis cin-miR-4059-3p mature miRNA
Sequence 33 - CAAUGCUGCACUUGCUGCUC - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39