miRBase entry: cin-mir-4060

Stem-loop cin-mir-4060


Accession
MI0015611
Description
Ciona intestinalis cin-mir-4060 precursor miRNA


Sequence

197 reads, 93 reads per million, 2 experiments
AUUUCACUCUUUCAACUGUUggucgaaauauauccAGCCGUUGUUGCAGUGAAGU
((((((((....((((.(((((...........))))).))))....))))))))

Structure
        CUUU    U     ucga 
AUUUCACU    CAAC GUUgg    a
||||||||    |||| |||||    a
UGAAGUGA    GUUG CGAcc    u
        CGUU    C     uaua 


Annotation confidence High
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Genome context
scaffold_44: 426196-426250 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4060
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4060-5p

Accession MIMAT0016608
Description Ciona intestinalis cin-miR-4060-5p mature miRNA
Sequence 1 - AUUUCACUCUUUCAACUGUU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4060-3p

Accession MIMAT0016609
Description Ciona intestinalis cin-miR-4060-3p mature miRNA
Sequence 36 - AGCCGUUGUUGCAGUGAAGU - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39