Stem-loop sequence cin-mir-4060

Accession MI0015611
Description Ciona intestinalis miR-4060 stem-loop
Stem-loop 
        c uu    u     ucga 
auuucacu u  caac guugg    a
|||||||| |  |||| |||||    a
ugaaguga g  guug cgacc    u
        c uu    c     uaua
Get sequence
Genome context
Coordinates (JGI2) Overlapping transcripts
scaffold_44: 426196-426250 [-]
intergenic
Clustered miRNAs
< 10kb from cin-mir-4060
cin-mir-4078 scaffold_44: 426304-426354 [-]
cin-mir-4060 scaffold_44: 426196-426250 [-]
Database links

Mature sequence cin-miR-4060-5p

Accession MIMAT0016608
Sequence

1 -  

auuucacucuuucaacuguu

 - 20

Get sequence
Evidence experimental; Solexa [1]

Mature sequence cin-miR-4060-3p

Accession MIMAT0016609
Sequence

36 -  

agccguuguugcagugaagu

 - 55

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).