miRBase entry: cin-mir-4067

Stem-loop cin-mir-4067


Accession
MI0015618
Description
Ciona intestinalis cin-mir-4067 precursor miRNA


Sequence

67 reads, 27 reads per million, 2 experiments
CAAGGAACGGAAAUGAGCCGuugguugacuuaacuucAGCGUUUCAUACGUUCCUUA
.((((((((...(((((.((((((...........)))))).))))).)))))))).

Structure
C        GAA     C      uuga 
 AAGGAACG   AUGAG CGuugg    c
 ||||||||   ||||| ||||||    u
 UUCCUUGC   UACUU GCGAcu    u
A        --A     U      ucaa 


Annotation confidence Not enough data
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Genome context
1p: 1929521-1929577 [-]

Database links

Mature cin-miR-4067-5p

Accession MIMAT0016622
Description Ciona intestinalis cin-miR-4067-5p mature miRNA
Sequence 1 - CAAGGAACGGAAAUGAGCCG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4067-3p

Accession MIMAT0016623
Description Ciona intestinalis cin-miR-4067-3p mature miRNA
Sequence 38 - AGCGUUUCAUACGUUCCUUA - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39