Stem-loop cin-mir-4070

Accession

MI0015621

Description

Ciona intestinalis cin-mir-4070 precursor miRNA

Sequence

9 reads, 4 reads per million, 2 experiments

UCGAAUGUUAUGCAGGCACGUGcacgucauagagcuaugCACGCGUCACGUGACAUCG
.(((.(((((((..(((.((((((.((......))..)))))).))).))))))))))

Structure

U   A       CA   A      -c  ca 
 CGA UGUUAUG  GGC CGUGca  gu  u
 ||| |||||||  ||| ||||||  ||   
 GCU ACAGUGC  CUG GCACgu  cg  a
-   -       -A   C      au  ag 

Annotation confidence Not enough data

Genome context

5q: 864845-864902 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cin-mir-4070

Mature cin-miR-4070-5p

• Accession: MIMAT0016628
• Description: Ciona intestinalis cin-miR-4070-5p mature miRNA
• Sequence: 1 - UCGAAUGUUAUGCAGGCACGUG - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4070-3p

• Accession: MIMAT0016629
• Description: Ciona intestinalis cin-miR-4070-3p mature miRNA
• Sequence: 40 - CACGCGUCACGUGACAUCG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39