miRBase entry: cin-mir-4074

Stem-loop cin-mir-4074


Accession
MI0015625
Description
Ciona intestinalis cin-mir-4074 precursor miRNA


Sequence

519 reads, 253 reads per million, 2 experiments
UGUUGACGGCGGGGAUGUUAguuuauuggcacCAACGUUAUCGCCGUCUUCA
((..((((((((.((((((.((........)).)))))).))))))))..))

Structure
  UU        G      A  uua 
UG  GACGGCGG GAUGUU gu   u
||  |||||||| |||||| ||    
AC  CUGCCGCU UUGCAA ca   u
  UU        A      C  cgg 


Annotation confidence Not enough data
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Genome context
10q: 635101-635152 [-]

Database links

Mature cin-miR-4074-5p

Accession MIMAT0016636
Description Ciona intestinalis cin-miR-4074-5p mature miRNA
Sequence 1 - UGUUGACGGCGGGGAUGUUA - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4074-3p

Accession MIMAT0016637
Description Ciona intestinalis cin-miR-4074-3p mature miRNA
Sequence 33 - CAACGUUAUCGCCGUCUUCA - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39