miRBase entry: cin-mir-4077a

Stem-loop cin-mir-4077a


Accession
MI0015628
Description
Ciona intestinalis cin-mir-4077a precursor miRNA
Gene family
MIPF0000905; mir-4077


Sequence

197 reads, 86 reads per million, 2 experiments
AAGUUGGAAAUUGAUUGACUggguuucgaaauauaccaguuaauugacuccaacua
.(((((((..((((((((((((..(.......)..)))))))))))).))))))).

Structure
A       AA            gu uc 
 AGUUGGA  UUGAUUGACUgg  u  g
 |||||||  ||||||||||||  |  a
 ucaaccu  aguuaauugacc  a  a
a       -c            au ua 


Annotation confidence Not enough data
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Genome context
7q: 6150979-6151034 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from cin-mir-4077a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4077a-5p

Accession MIMAT0016642
Description Ciona intestinalis cin-miR-4077a-5p mature miRNA
Sequence 1 - AAGUUGGAAAUUGAUUGACU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39