Stem-loop sequence cin-mir-4081

Accession MI0015634
Description Ciona intestinalis miR-4081 stem-loop
Gene family MIPF0001241; mir-4081
Stem-loop 
          cc           ug 
uaguucaacu  auacagaauug  g
||||||||||  |||||||||||   
gucgaguuga  uaugucuugac  u
          -a           uc
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Genome context
Coordinates (JGI2) Overlapping transcripts
2q: 6481027-6481077 [-]
sense
ENSCINT00000006217 ; F6PPN6_CIOIN; intron 1
Clustered miRNAs
< 10kb from cin-mir-4081
cin-mir-4081 2q: 6481027-6481077 [-]
cin-mir-4082 2q: 6481027-6481076 [+]
Database links

Mature sequence cin-miR-4081-5p

Accession MIMAT0016651
Sequence

1 -  

uaguucaacuccauacagaa

 - 20

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Evidence experimental; Solexa [1]

Mature sequence cin-miR-4081-3p

Accession MIMAT0016652
Sequence

32 -  

guucuguauaaguugagcug

 - 51

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Evidence experimental; Solexa [1]

References

1
PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).