miRBase entry: cin-mir-4088

Stem-loop cin-mir-4088


Accession
MI0015641
Description
Ciona intestinalis cin-mir-4088 precursor miRNA


Sequence

67 reads, 40 reads per million, 2 experiments
GACUAUGAUGAGAUGUUGGaguacugggcucugaucugcaugauugacaAUCUCCACACUGAGUCCA
((((.((..(((((((((((((.....)))))((((.....))))))).)))))..))...))))..

Structure
--    --A  AU     -   -------------     a 
  GACU   UG  GAGAU GUU             GGagu c
  ||||   ||  ||||| |||             ||||| u
  CUGA   AC  CUCUA cag             ucucg g
AC    GUC  AC     a   uuaguacgucuag     g 


Annotation confidence Not enough data
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Genome context
4q: 5112233-5112299 [-]

Database links

Mature cin-miR-4088-5p

Accession MIMAT0016664
Description Ciona intestinalis cin-miR-4088-5p mature miRNA
Sequence 1 - GACUAUGAUGAGAUGUUGG - 19
Evidence experimental
Illumina [1]

Mature cin-miR-4088-3p

Accession MIMAT0016665
Description Ciona intestinalis cin-miR-4088-3p mature miRNA
Sequence 50 - AUCUCCACACUGAGUCCA - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39