Stem-loop cin-mir-4093

Accession

MI0015646

Description

Ciona intestinalis cin-mir-4093 precursor miRNA

Sequence

15 reads, 11 reads per million, 2 experiments

CUCCGCAGCUUUUGCUGCAUuaguugcccauaaagggcggauacgugAUGCAACAAAACUGCGGUUA
..((((((.(((((.((((((((((((((.....)))))...)).))))))).)))))))))))...

Structure

-CU      C     C       -  ---     a 
   CCGCAG UUUUG UGCAUua gu   ugccc u
   |||||| ||||| ||||||| ||   ||||| a
   GGCGUC AAAAC ACGUAgu ca   gcggg a
AUU      -     A       g  uag     a 

Annotation confidence Not enough data

Genome context

1p: 4283623-4283689 [-]

Mature cin-miR-4093-5p

• Accession: MIMAT0016672
• Description: Ciona intestinalis cin-miR-4093-5p mature miRNA
• Sequence: 1 - CUCCGCAGCUUUUGCUGCAU - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4093-3p

• Accession: MIMAT0016673
• Description: Ciona intestinalis cin-miR-4093-3p mature miRNA
• Sequence: 48 - AUGCAACAAAACUGCGGUUA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39