miRBase entry: cin-mir-4100

Stem-loop cin-mir-4100


Accession
MI0015653
Description
Ciona intestinalis cin-mir-4100 precursor miRNA


Sequence

37 reads, 14 reads per million, 2 experiments
UGAGCUUUCGUCUUAUGAUUGauguaucauuAAUCAUUAGAUGAAAACUCACG
((((.((((((((.((((((((((...)))))))))).)))))))).))))..

Structure
--    C        U          u 
  UGAG UUUCGUCU AUGAUUGaug  
  |||| |||||||| |||||||||| a
  ACUC AAAGUAGA UACUAAuuac  
GC    A        U          u 


Annotation confidence Not enough data
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Genome context
7q: 5166716-5166768 [-]

Database links

Mature cin-miR-4100-5p

Accession MIMAT0016684
Description Ciona intestinalis cin-miR-4100-5p mature miRNA
Sequence 1 - UGAGCUUUCGUCUUAUGAUUG - 21
Evidence experimental
Illumina [1]

Mature cin-miR-4100-3p

Accession MIMAT0016685
Description Ciona intestinalis cin-miR-4100-3p mature miRNA
Sequence 32 - AAUCAUUAGAUGAAAACUCACG - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39