miRBase entry: cin-mir-4101

Stem-loop cin-mir-4101


Accession
MI0015654
Description
Ciona intestinalis cin-mir-4101 precursor miRNA


Sequence

1 reads, 1 reads per million, 1 experiments
gugcgccuauauaaucuaccguuacuuuuauuggguacguUAGGUUGUUGUAUAUGUGG
...(((.(((((((((((.(((..((......))..))).)))))...)))))).))).

Structure
gug   c      ---     c   ua  uu 
   cgc uauaua   aucua cgu  cu  u
   ||| ||||||   ||||| |||  ||   
   GUG AUAUGU   UGGAU gca  gg  a
--G   U      UGU     u   ug  uu 


Annotation confidence Not enough data
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Genome context
14p: 1000821-1000879 [-]

Database links

Mature cin-miR-4101-3p

Accession MIMAT0016686
Description Ciona intestinalis cin-miR-4101-3p mature miRNA
Sequence 41 - UAGGUUGUUGUAUAUGUGG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39