miRBase entry: cin-mir-4102

Stem-loop cin-mir-4102


Accession
MI0015655
Description
Ciona intestinalis cin-mir-4102 precursor miRNA


Sequence

15 reads, 9 reads per million, 2 experiments
CGCAAUACACAUGGUGUCAUauucauuaagucUGACGCCAUCGCGUAUUGGUU
..((((((.((((((((((.(((.....))).))))))))).).))))))...

Structure
-CG      A -         U   c 
   CAAUAC C AUGGUGUCA auu a
   |||||| | ||||||||| ||| u
   GUUAUG G UACCGCAGU uga u
UUG      C C         c   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-miR-4102-5p

Accession MIMAT0016687
Description Ciona intestinalis cin-miR-4102-5p mature miRNA
Sequence 1 - CGCAAUACACAUGGUGUCAU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4102-3p

Accession MIMAT0016688
Description Ciona intestinalis cin-miR-4102-3p mature miRNA
Sequence 33 - UGACGCCAUCGCGUAUUGGUU - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39