miRBase entry: cin-mir-4104

Stem-loop cin-mir-4104


Accession
MI0015658
Description
Ciona intestinalis cin-mir-4104 precursor miRNA


Sequence

ACGUGAAAUUGUUGACUGauuguauauuugacgucacuauacacauuaaacgucauuacgacgucauac
..((((..((((((((((((((((((..((....)).)))))).))))...))))..))))..))))..

Structure
AC    AA    --    ---    -      uu  a 
  GUGA  UUGU  UGAC   UGau uguaua  ug c
  ||||  ||||  ||||   |||| ||||||  ||  
  uacu  agca  acug   auua acauau  ac g
ca    gc    uu    caa    c      -c  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_89: 477669-477737 [-]

Database links

Mature cin-miR-4104-5p

Accession MIMAT0016691
Description Ciona intestinalis cin-miR-4104-5p mature miRNA
Sequence 1 - ACGUGAAAUUGUUGACUG - 18
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39