miRBase entry: cin-mir-4105

Stem-loop cin-mir-4105


Accession
MI0015659
Description
Ciona intestinalis cin-mir-4105 precursor miRNA


Sequence

ACAAAAAACGUGGGUCACuguguccgguucccaagccuggagcugaggucccguuuuuuaa
..((((((((.(((((.(.((.(((((((....)))).))))).).)))))))))))))..

Structure
AC        U     A u  g   -    c 
  AAAAAACG GGGUC C gu ucc gguu c
  |||||||| ||||| | || ||| ||||  
  uuuuuugc ccugg g cg agg ccga c
aa        -     a u  -   u    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
1q: 958107-958167 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4105
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4105-5p

Accession MIMAT0016692
Description Ciona intestinalis cin-miR-4105-5p mature miRNA
Sequence 1 - ACAAAAAACGUGGGUCAC - 18
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39