miRBase entry: cin-mir-4128

Stem-loop cin-mir-4128


Accession
MI0015683
Description
Ciona intestinalis cin-mir-4128 precursor miRNA


Sequence

uucccagucuaauucacacacgaaugugcuugaucgaaaaaacagugUUUGAGGUAGAACUGGAGGA
(((((((((((.((((.((((...(((..((......))..))))))).)))).))).))))).)))

Structure
   -     -   a    c    gaa   gc  ga 
uuc ccagu cua uuca acac   ugu  uu  u
||| ||||| ||| |||| ||||   |||  ||   
AGG GGUCA GAU GAGU Ugug   aca  aa  c
   A     A   G    U    ---   aa  ag 


Annotation confidence Not enough data
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Genome context
scaffold_1082: 10337-10403 [+]

Database links

Mature cin-miR-4128-3p

Accession MIMAT0016723
Description Ciona intestinalis cin-miR-4128-3p mature miRNA
Sequence 48 - UUUGAGGUAGAACUGGAGGA - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39