miRBase entry: cin-mir-4131

Stem-loop cin-mir-4131


Accession
MI0015686
Description
Ciona intestinalis cin-mir-4131 precursor miRNA


Sequence

2 reads, 1 reads per million, 1 experiments
ACCUAGGAAUUUUGCCACAGuuguucaaUUGUGGCAAAAUUCCCUAGG
.(((((((((((((((((((((....))))))))))))))).))))))

Structure
A      -               g 
 CCUAGG AAUUUUGCCACAGuu u
 |||||| |||||||||||||||  
 GGAUCC UUAAAACGGUGUUaa u
-      C               c 


Annotation confidence Not enough data
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Genome context
14p: 1461930-1461977 [-]

Database links

Mature cin-miR-4131-5p

Accession MIMAT0016726
Description Ciona intestinalis cin-miR-4131-5p mature miRNA
Sequence 1 - ACCUAGGAAUUUUGCCACAG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4131-3p

Accession MIMAT0016727
Description Ciona intestinalis cin-miR-4131-3p mature miRNA
Sequence 29 - UUGUGGCAAAAUUCCCUAGG - 48
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39