miRBase entry: cin-mir-4140

Stem-loop cin-mir-4140


Accession
MI0015695
Description
Ciona intestinalis cin-mir-4140 precursor miRNA


Sequence

9 reads, 6 reads per million, 1 experiments
ACGUCGUCGUUCCCACCUGGcuauuaacuuaucACCAGAUGAUUAUGACGACG
.(((((((((...((.((((..((......))..)))).))...)))))))))

Structure
A         UCC  C    cu  ua 
 CGUCGUCGU   CA CUGG  au  a
 |||||||||   || ||||  ||   
 GCAGCAGUA   GU GACC  ua  c
-         UUA  A    Ac  uu 


Annotation confidence Not enough data
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Genome context
1p: 1656348-1656400 [+]

Database links

Mature cin-miR-4140-5p

Accession MIMAT0016738
Description Ciona intestinalis cin-miR-4140-5p mature miRNA
Sequence 1 - ACGUCGUCGUUCCCACCUGG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4140-3p

Accession MIMAT0016739
Description Ciona intestinalis cin-miR-4140-3p mature miRNA
Sequence 34 - ACCAGAUGAUUAUGACGACG - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39