miRBase entry: cin-mir-4143

Stem-loop cin-mir-4143


Accession
MI0015698
Description
Ciona intestinalis cin-mir-4143 precursor miRNA


Sequence

5 reads, 2 reads per million, 2 experiments
CAUGUUUUGUGUAAUUGUGUuauuuauagaaaaCAUGAAAACACCAAACAUGU
(((((((.((((..(((((((..........)))))))..)))).))))))).

Structure
-       U    AA       auuu 
 CAUGUUU GUGU  UUGUGUu    a
 ||||||| ||||  |||||||     
 GUACAAA CACA  AGUACaa    u
U       C    AA       aaga 


Annotation confidence Not enough data
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Genome context
scaffold_176: 50251-50303 [-]

Database links

Mature cin-miR-4143-5p

Accession MIMAT0016744
Description Ciona intestinalis cin-miR-4143-5p mature miRNA
Sequence 1 - CAUGUUUUGUGUAAUUGUGU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4143-3p

Accession MIMAT0016745
Description Ciona intestinalis cin-miR-4143-3p mature miRNA
Sequence 34 - CAUGAAAACACCAAACAUGU - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39