miRBase entry: cin-mir-4148

Stem-loop cin-mir-4148


Accession
MI0015703
Description
Ciona intestinalis cin-mir-4148 precursor miRNA


Sequence

18 reads, 7 reads per million, 2 experiments
GGAGUCGUGUCUGGACAGCucaugguaaaaccuaaguuauccucaaacgauuac
..((((((....(((.((((...(((...)))..)))).)))....))))))..

Structure
GG      GUCU   C    cau   a 
  AGUCGU    GGA AGCu   ggu  
  ||||||    ||| ||||   ||| a
  uuagca    ccu uuga   cca  
ca      aacu   a    -au   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
2q: 1058794-1058847 [-]

Database links

Mature cin-miR-4148-5p

Accession MIMAT0016751
Description Ciona intestinalis cin-miR-4148-5p mature miRNA
Sequence 1 - GGAGUCGUGUCUGGACAGC - 19
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39