miRBase entry: cin-mir-4150

Stem-loop cin-mir-4150


Accession
MI0015705
Description
Ciona intestinalis cin-mir-4150 precursor miRNA


Sequence

8 reads, 3 reads per million, 2 experiments
AUAGCUACUGUGAGUGUGAaagaaaucuucuagcuuuuguuuuuauaaaaucaguaagaucacuuuaacacucauaguacaua
.....((((((((((((.((((..(((((((.(.((((((....)))))).))).)))))..)))).))))))))))))....

Structure
AUAGC            G    aa     -  a c      u 
     UACUGUGAGUGU Aaag  aucuu cu g uuuugu u
     |||||||||||| ||||  ||||| || | ||||||  
     augauacucaca uuuc  uagaa ga c aaaaua u
-auac            a    ac     u  - u      u 


Annotation confidence Not enough data
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Genome context
2q: 6500763-6500845 [+]

Database links

Mature cin-miR-4150-5p

Accession MIMAT0016753
Description Ciona intestinalis cin-miR-4150-5p mature miRNA
Sequence 1 - AUAGCUACUGUGAGUGUGA - 19
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39