miRBase entry: cin-mir-4153

Stem-loop cin-mir-4153


Accession
MI0015708
Description
Ciona intestinalis cin-mir-4153 precursor miRNA


Sequence

1 reads, 1 reads per million, 1 experiments
gacgucacuauccgcgggcguuucgugauauacauacucgaaaAUCGCGUUUGGUUACGUC
(((((.((((..(((((...(((((.............))))).)))))..)))).)))))

Structure
     c    uc     gcg     ugaua 
gacgu acua  cgcgg   uuucg     u
||||| ||||  |||||   |||||     a
CUGCA UGGU  GCGCU   aaagc     c
     U    UU     --A     ucaua 


Annotation confidence Not enough data
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Genome context
scaffold_197: 55379-55439 [-]

Database links

Mature cin-miR-4153-3p

Accession MIMAT0016757
Description Ciona intestinalis cin-miR-4153-3p mature miRNA
Sequence 44 - AUCGCGUUUGGUUACGUC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39