miRBase entry: cin-mir-4157

Stem-loop cin-mir-4157


Accession
MI0015712
Description
Ciona intestinalis cin-mir-4157 precursor miRNA


Sequence

4 reads, 2 reads per million, 2 experiments
UGGUAAGAUGCGAGUAUGGUgcuucauaaaucaagcacuucccgccuuaccg
.((((((..(((.(...(((((((........))))))).).))))))))).

Structure
U      AU   A UAU       cau 
 GGUAAG  GCG G   GGUgcuu   a
 ||||||  ||| |   |||||||    
 ccauuc  cgc c   ucacgaa   a
g      --   c --u       cua 


Annotation confidence Not enough data
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Genome context
scaffold_279: 54343-54394 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4157
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4157-5p

Accession MIMAT0016763
Description Ciona intestinalis cin-miR-4157-5p mature miRNA
Sequence 1 - UGGUAAGAUGCGAGUAUGGU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39