miRBase entry: cin-mir-4171

Stem-loop cin-mir-4171


Accession
MI0015726
Description
Ciona intestinalis cin-mir-4171 precursor miRNA


Sequence

8 reads, 4 reads per million, 2 experiments
UGACUCUCUUAAGGAAGCCAggacuuuuucuuaggucagaguca
(((((((((((((((((........))))))))))..)))))))

Structure
       --          CCA 
UGACUCU  CUUAAGGAAG   g
|||||||  ||||||||||    
acugaga  ggauucuuuu   g
       cu          uca 


Annotation confidence Not enough data
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Genome context
scaffold_156: 134470-134513 [+]

Database links

Mature cin-miR-4171-5p

Accession MIMAT0016779
Description Ciona intestinalis cin-miR-4171-5p mature miRNA
Sequence 1 - UGACUCUCUUAAGGAAGCCA - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39