miRBase entry: cin-mir-4173

Stem-loop cin-mir-4173


Accession
MI0015728
Description
Ciona intestinalis cin-mir-4173 precursor miRNA


Sequence

4 reads, 1 reads per million, 2 experiments
AUUUCGUCUGCCAACCCGCAagagucauuaacguaaaugaguuucuucuUGCAAGAGUUCGCAGACGAA
..(((((((((.((((.((((((((((((......))))).....)))))))..).))).)))))))))

Structure
AU         C   - -C       -----     aa 
  UUCGUCUGC AAC C  GCAagag     ucauu  c
  ||||||||| ||| |  |||||||     |||||   
  AAGCAGACG UUG G  CGUucuu     aguaa  g
--         C   A AA       cuuug     au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
9p: 1992923-1992991 [+]

Database links

Mature cin-miR-4173-5p

Accession MIMAT0016781
Description Ciona intestinalis cin-miR-4173-5p mature miRNA
Sequence 1 - AUUUCGUCUGCCAACCCGCA - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4173-3p

Accession MIMAT0016782
Description Ciona intestinalis cin-miR-4173-3p mature miRNA
Sequence 50 - UGCAAGAGUUCGCAGACGAA - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39