miRBase entry: cin-mir-4176

Stem-loop cin-mir-4176


Accession
MI0015731
Description
Ciona intestinalis cin-mir-4176 precursor miRNA


Sequence

9 reads, 6 reads per million, 1 experiments
UCCAGAAAUUUCUUUUAAGUaaccuuuuauauucaaaaguuuuuuuuucuuggauauacauguacuuauuuuuuuuauuucu
...((((((......((((((......((((((((((((......))).)))))))))....))))))........))))))

Structure
UCC      --UUCUUU      accuuu         -   uu 
   AGAAAU        UAAGUa      uauauucaa aag  u
   ||||||        ||||||      ||||||||| |||   
   ucuuua        auucau      auauagguu uuu  u
---      uuuuuuuu      --guac         c   uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
4q: 2967060-2967141 [-]

Database links

Mature cin-miR-4176-5p

Accession MIMAT0016785
Description Ciona intestinalis cin-miR-4176-5p mature miRNA
Sequence 1 - UCCAGAAAUUUCUUUUAAGU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39