miRBase entry: cin-mir-4177

Stem-loop cin-mir-4177


Accession
MI0015732
Description
Ciona intestinalis cin-mir-4177 precursor miRNA


Sequence

12 reads, 1 reads per million, 1 experiments
UAUUUUUAAAACAGCAAUUAaaaucgaaacccacuuuuaaaacagcaauuaacauugggguUAAUUGCUGUUUUAAAAAUA
((((((((((((((((((((........((((....((((........)))).....))))))))))))))))))))))))

Structure
                    aaaucgaa    -acuu    aac 
UAUUUUUAAAACAGCAAUUA        accc     uuaa   a
||||||||||||||||||||        ||||     ||||    
AUAAAAAUUUUGUCGUUAAU        uggg     aauu   g
                    --------    guuac    aac 


Annotation confidence Not enough data
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Genome context
2q: 5092762-5092842 [-]

Database links

Mature cin-miR-4177-5p

Accession MIMAT0016786
Description Ciona intestinalis cin-miR-4177-5p mature miRNA
Sequence 1 - UAUUUUUAAAACAGCAAUUA - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4177-3p

Accession MIMAT0016787
Description Ciona intestinalis cin-miR-4177-3p mature miRNA
Sequence 62 - UAAUUGCUGUUUUAAAAAUA - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39