miRBase entry: cin-mir-4178a

Stem-loop cin-mir-4178a


Accession
MI0015733
Description
Ciona intestinalis cin-mir-4178a precursor miRNA
Gene family
MIPF0000928; mir-4178


Sequence

1 reads, 1 reads per million, 1 experiments
UGCAAACUUGAUCAGGUUUUagcauuaucaucguugcuucuaacuuggaacccguuugca
(((((((....(((((((..((((..........))))...))))))).....)))))))

Structure
       -UUGA       -UU    uuau 
UGCAAAC     UCAGGUU   agca    c
|||||||     |||||||   ||||     
acguuug     gguucaa   ucgu    a
       cccaa       ucu    ugcu 


Annotation confidence Not enough data
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Genome context
scaffold_67: 366326-366385 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cin-mir-4178a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4178a-5p

Accession MIMAT0016788
Description Ciona intestinalis cin-miR-4178a-5p mature miRNA
Sequence 1 - UGCAAACUUGAUCAGGUUUU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39