miRBase entry: cin-mir-4183

Stem-loop cin-mir-4183


Accession
MI0015739
Description
Ciona intestinalis cin-mir-4183 precursor miRNA


Sequence

4 reads, 4 reads per million, 1 experiments
AGCGGGAAGGAGUGGCCGGUgauauaacagagauaauacagguacuuuguuauucuuAUCCGUGAUCGCUUUGCCCGGC
..((((..((((((((((((((.(((((((((((.......)).)))))))))..))).))).).))))))).))))..

Structure
AG    AA       - -   -   -u         -  aa 
  CGGG  GGAGUGG C CGG Uga  auaacagag au  u
  ||||  ||||||| | ||| |||  ||||||||| ||  a
  GCCC  UUUCGCU G GCC Auu  uauuguuuc ug  c
CG    -G       A U   U   cu         a  ga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
8q: 1437629-1437707 [-]

Database links

Mature cin-miR-4183-5p

Accession MIMAT0016798
Description Ciona intestinalis cin-miR-4183-5p mature miRNA
Sequence 1 - AGCGGGAAGGAGUGGCCGGU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4183-3p

Accession MIMAT0016799
Description Ciona intestinalis cin-miR-4183-3p mature miRNA
Sequence 58 - AUCCGUGAUCGCUUUGCCCGGC - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39