miRBase entry: cin-mir-4189

Stem-loop cin-mir-4189


Accession
MI0015746
Description
Ciona intestinalis cin-mir-4189 precursor miRNA


Sequence

18 reads, 8 reads per million, 2 experiments
ACGUGCGUGGUAGUUUAACCUuuaccuuacguuguaguuugaccuuugcgugugucguaguguaagcuccacgugcau
..((((((((.((((((....((((..(((..(((((........))))).)))..))))..))))))))))))))..

Structure
AC        U      ACCU    cu   gu     uuu 
  GUGCGUGG AGUUUA    uuac  uac  uguag   g
  |||||||| ||||||    ||||  |||  |||||    
  cgugcacc ucgaau    gaug  gug  gcguu   a
ua        -      --gu    cu   -u     ucc 


Annotation confidence Not enough data
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Genome context
8q: 28178-28255 [-]

Database links

Mature cin-miR-4189-5p

Accession MIMAT0016807
Description Ciona intestinalis cin-miR-4189-5p mature miRNA
Sequence 1 - ACGUGCGUGGUAGUUUAACCU - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39