miRBase entry: cin-mir-4197

Stem-loop cin-mir-4197


Accession
MI0015754
Description
Ciona intestinalis cin-mir-4197 precursor miRNA


Sequence

7 reads, 3 reads per million, 2 experiments
CACGGUUCAGCUGCAUCAGGcuuaccaacgcccggaugcagccgugcucgu
.(((((.(.((((((((.(((........)))..)))))))).).)).)))

Structure
C   -  U A        -A   uua 
 ACG GU C GCUGCAUC  GGc   c
 ||| || | ||||||||  |||    
 ugc cg g cgacguag  ccg   c
-   u  u c        gc   caa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
12q: 2513017-2513067 [+]

Database links

Mature cin-miR-4197-5p

Accession MIMAT0016816
Description Ciona intestinalis cin-miR-4197-5p mature miRNA
Sequence 1 - CACGGUUCAGCUGCAUCAGG - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39