miRBase entry: cin-mir-4199

Stem-loop cin-mir-4199


Accession
MI0015756
Description
Ciona intestinalis cin-mir-4199 precursor miRNA


Sequence

1 reads, 1 reads per million, 1 experiments
cuuucguuuuuuuuucgaucgagcggcauucgauUGAAUUCGAAAAGGCCAAAC
.....((((((((((((((((((.....))))))))))...)))))))).....

Structure
cuuuc        ---          c 
     guuuuuuu   uucgaucgag g
     ||||||||   |||||||||| g
     CGGAAAAG   AAGUuagcuu c
CAAAC        CUU          a 


Annotation confidence Not enough data
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Genome context
2q: 1006638-1006691 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4199
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4199-3p

Accession MIMAT0016818
Description Ciona intestinalis cin-miR-4199-3p mature miRNA
Sequence 35 - UGAAUUCGAAAAGGCCAAAC - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39