miRBase entry: cin-mir-4202

Stem-loop cin-mir-4202


Accession
MI0015759
Description
Ciona intestinalis cin-mir-4202 precursor miRNA


Sequence

UGUGUGUUUCAUUUCGUUGcuuaauuaguugcaaaauaaucauuaguuuuguaucauccuuguuguagcagcuuuuugcugaaauuuuaca
((((.((((((....((((((((((.((.((((((((........)))))))).....)).)))).)))))).......))))))..))))

Structure
    -U      ---UUUC      -    u  ----u        aau 
UGUG  GUUUCA       GUUGcu uaau ag     ugcaaaau   c
||||  ||||||       |||||| |||| ||     ||||||||    
acau  uaaagu       cgacga guug uc     auguuuug   a
    uu      cguuuuu      u    u  cuacu        auu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-miR-4202-5p

Accession MIMAT0016822
Description Ciona intestinalis cin-miR-4202-5p mature miRNA
Sequence 1 - UGUGUGUUUCAUUUCGUUG - 19
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39