miRBase entry: cin-mir-4209

Stem-loop cin-mir-4209


Accession
MI0015766
Description
Ciona intestinalis cin-mir-4209 precursor miRNA


Sequence

6 reads, 4 reads per million, 1 experiments
UAAUGAUUAGUAUGUGGCUUuuuuauaucuagccgauuuauuuuaaaugccccaauuuaauuauug
((((((((((..((.((((((..((.(((.....))).))....))).))).))..))))))))))

Structure
          UA  U   -   --uu  u   u 
UAAUGAUUAG  UG GGC UUu    ua auc a
||||||||||  || ||| |||    || ||| g
guuauuaauu  ac ccg aaa    au uag c
          ua  c   u   uuuu  u   c 


Annotation confidence Not enough data
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Genome context
9p: 2705812-2705877 [+]

Database links

Mature cin-miR-4209-5p

Accession MIMAT0016830
Description Ciona intestinalis cin-miR-4209-5p mature miRNA
Sequence 1 - UAAUGAUUAGUAUGUGGCUU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39