miRBase entry: cin-let-7f

Stem-loop cin-let-7f


Accession
MI0015777
Description
Ciona intestinalis cin-let-7f precursor miRNA

Literature search
3 open access papers mention cin-let-7f
(18 sentences)

Sequence

3756 reads, 1273 reads per million, 2 experiments
UGAGGUAGUGGAUUCUGUaguuuuugcucguuaaaugagccagaggagguaaCUGCACAUUCCACCAUCUCGU
.(((((.(((((...((((((((((.(((.............))).))).)))))))...))))).)))))..

Structure
-U     A     UUC       -   g   guuaa 
  GAGGU GUGGA   UGUaguu uuu cuc     a
  ||||| |||||   ||||||| ||| |||     u
  CUCUA CACCU   ACGUCaa gga gag     g
UG     C     UAC       u   g   accga 


Annotation confidence Not enough data
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Genome context
4q: 2082406-2082478 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from cin-let-7f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-let-7f-5p

Accession MIMAT0016842
Description Ciona intestinalis cin-let-7f-5p mature miRNA
Sequence 1 - UGAGGUAGUGGAUUCUGU - 18
Evidence experimental
Illumina [1]

Mature cin-let-7f-3p

Accession MIMAT0016843
Description Ciona intestinalis cin-let-7f-3p mature miRNA
Sequence 53 - CUGCACAUUCCACCAUCUCGU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39