Stem-loop cin-let-7f

Accession

MI0015777

Description

Ciona intestinalis cin-let-7f precursor miRNA

Literature search

3 open access papers mention cin-let-7f
(18 sentences)

Sequence

3756 reads, 1269 reads per million, 2 experiments

UGAGGUAGUGGAUUCUGUaguuuuugcucguuaaaugagccagaggagguaaCUGCACAUUCCACCAUCUCGU
.(((((.(((((...((((((((((.(((.............))).))).)))))))...))))).)))))..

Structure

-U     A     UUC       -   g   guuaa 
  GAGGU GUGGA   UGUaguu uuu cuc     a
  ||||| |||||   ||||||| ||| |||     u
  CUCUA CACCU   ACGUCaa gga gag     g
UG     C     UAC       u   g   accga 

Annotation confidence Not enough data

Genome context

4q: 2082406-2082478 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cin-let-7f

Mature cin-let-7f-5p

• Accession: MIMAT0016842
• Description: Ciona intestinalis cin-let-7f-5p mature miRNA
• Sequence: 1 - UGAGGUAGUGGAUUCUGU - 18
• Evidence: experimental ; Illumina [1]

Mature cin-let-7f-3p

• Accession: MIMAT0016843
• Description: Ciona intestinalis cin-let-7f-3p mature miRNA
• Sequence: 53 - CUGCACAUUCCACCAUCUCGU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39